When enhancements/patches are to be applied, a new jar file with changed artifacts must be re-imported into OSB.
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This task can't be scripted with WLST, The first time you need to generate a Deployment Plan and after that, you can add your EIS entries.
In a Cluster environment you need to put this Deployment Plan on a shared storage or copy this to every server.
In this blogpost I will you show that you can deploy your own Resource Adapter with your EIS entries to the SOA Server or Cluster.
This way you can separate EIS entries in their own Resource Adapter, so you don't have one big Deployment Plan.
When upgrading to from OSB 11g to OSB 12c or to its cloud cousin SOA CS there are new features that you should be aware of.